CassavaBase

clone(s) in cart (order)

Old browser version detected

This site is optimized for modern web browsers

Please upgrade your browser

Sorry!, some features may not work in outdated browsers

Search
Manage
Analyze
- Quality Control
- Validated Trials
- Analyses & Models
- Breeder Tools
- Selection Index
- Genomic Selection (solGS)
- Genomic Prediction of Parent Combinations
- Population Structure (PCA)
- Clustering
- Kinship & Inbreeding
- Correlation
- Stability AMMI/GGE
- Heritability
- Accession Usage
- Mixed Models
- Compare Trials
- Graphical Filtering
- BoxPlotter Tool
- GWAS
- Image Analysis
- Sequence Analysis
- BLAST
- VIGS Tool
- HapMap Jbrowse
- Other
- Ontology Browser
- Compose a New Trait
SOPs
Maps
About

Advanced

This site uses cookies to provide logins and other features. Please accept the use of cookies by clicking Accept.

SGN Marker scaffold4443:62214

SGN-M5136

Synonyms

None

Locus associations

None

Mapped locations

Map: new cassava merged map
Map version 6 (location: 20906)
Chromosome I
Position 5.73 cM
Confidence uncalculated
Protocol SNP

new cassava merged map

Map: Cassava GBS consensus map
Map version 4 (location: 5136)
Chromosome IX
Position 8.05 cM
Confidence uncalculated
Protocol unknown

Cassava GBS consensus map

Related Markers

Related Genotyped Markers: These markers have been genotyped and share a name with this marker

Loading...

Genomic location of scaffold4443:62214

%2Fsearch%2Fmarkers%2Fmarkerinfo.pl%3Fmarker_id%3D5136 marker 5136

User comments

Please wait, checking for comments. (If comments do not show up, access them here)

Your Lists

Public Lists

List Contents

List Validation Report: Failed

Elements not found:

Optional: Add Missing Accessions to A List

Mismatched case

Click the Adjust Case button to align the case in the list with what is in the database.

Multiple mismatched case

Items listed here have mulitple case mismatches and must be fixed manually. If accessions need to be merged, contact the database directly.

List elements matching a synonym

Multiple synonym matches

Multiple synonym matches have to be resolved manually. Contact database administrators if necessary.

Fuzzy Search Results

Synonym Search Results

Create a New List from Unique Names:

Available Seedlots

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

Create a New List from Selected Seedlots:

Manage Seedlots

Your Datasets

Public Datasets

Dataset Contents

Dataset Validation Failed

Elements not found:

Your Calendar

Having trouble viewing events on the calendar?
Are you associated with the breeding program you are interested in viewing?

Calendar Permissions

Add New Event

Project:

Event Type:

Start:

End:

Description:

Web URL:

http://www.

Event Info

Attribute	Value
Project Name:
Start Date:
End Date:
Event Type:
Event Description:
Event Web URL:

Edit Event

Project:

Event Type:

Start:

End:

Description:

Web URL:

Login

Forgot Username

If you've forgotten your username, enter your email address below. An email will be sent with any account username(s) associated with your email address.

Email Address

Reset Password

To reset your password, please enter your email address. A link will be sent to that address with a link that will enable you to reset your password.

Email Address

Create New User

Notice

Before creating a new account, please check if you already have an account using the directory search.
A link will be emailed to you. Please click on it to activate the account.
All fields are required.

First Name:

Last Name:

Organization:

Username:

Username must be at least 7 characters long.

Password:

Password must be at least 7 characters long and different from your username.

Confirm Password:

Password must be at least 7 characters long and different from your username.

Email Address:

An email will be sent to this address requiring you to confirm its receipt to activate your account.

Working

Progress

NextGen Cassava

NextGen Cassava Breeding project promises to substantially increase the rate of genetic improvement in cassava breeding and unlock the full potential of cassava, a staple crop central to food security and livelihoods across Africa.

College of Agriculture and Life Sciences, Cornell University, USA
National Crops Resources Research Institute (NaCRRI), Uganda
National Root Crops Research Institute (NRCRI), Nigeria
International Institute of Tropical Agriculture (IITA), Nigeria
Boyce Thompson Institute (BTI) for Plant Research, USA
US Department of Energy (DOE) Joint Genome Institute (JGI), USA
Makerere University, Uganda

Contact

SGN Marker scaffold4443:62214

NextGen Cassava

Project Partners